pairwise_modes: compute the mode of all sample/column pairs column pairs that...
In ftwkoopmans/msdap: Mass Spectrometry Downstream Analysis Pipeline
View source: R/normalize_vwmb.R
pairwise_modes R Documentation
compute the mode of all sample/column pairs
column pairs that have less than 10 values in common are skipped (result value left at default 0)
Description
compute the mode of all sample/column pairs
column pairs that have less than 10 values in common are skipped (result value left at default 0)
Usage
pairwise_modes(x, min_overlap = 10)
Arguments
x
log-transformed data matrix, where columns are samples and rows are features
min_overlap
minimum number of rows that have a finite foldchange for any given combination of columns (otherwise, mode foldchange is not computed)
Value
a matrix of ncol*ncol pairwise foldchange-modes
ftwkoopmans/msdap documentation built on March 5, 2025, 12:15 a.m.
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View source: R/normalize_vwmb.R
| pairwise_modes | R Documentation |
compute the mode of all sample/column pairs column pairs that have less than 10 values in common are skipped (result value left at default 0)
Description
compute the mode of all sample/column pairs column pairs that have less than 10 values in common are skipped (result value left at default 0)
Usage
pairwise_modes(x, min_overlap = 10)
Arguments
x |
log-transformed data matrix, where columns are samples and rows are features |
min_overlap |
minimum number of rows that have a finite foldchange for any given combination of columns (otherwise, mode foldchange is not computed) |
Value
a matrix of ncol*ncol pairwise foldchange-modes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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