proteingroup_to_idshort_lookuptable: lookup table for proteingroup identifiers (in long or short...

In ftwkoopmans/msdap: Mass Spectrometry Downstream Analysis Pipeline

lookup table for proteingroup identifiers (in long or short ID form) to idshort and isdecoy

Description

lookup table for proteingroup identifiers (in long or short ID form) to idshort and isdecoy

Usage

proteingroup_to_idshort_lookuptable(x)

Arguments

x	array of proteingroup identifiers

Examples

## Not run: 
proteingroup_to_idshort_lookuptable(c(
  NA, "", # empty values are skipped
  "P36578", "P36578", "P36578", "P36578", # unique values are returned
  "P55011-3;P55011",
  "Q5TF21;rev_E9PJP2", "decoy_Q5TF21;E9PJP2",
  "sp|P63027|VAMP2_HUMAN;tr|K7ENK9|K7ENK9_HUMAN",
  "sp|P63027|VAMP2_HUMAN;rev_tr|K7ENK9|K7ENK9_HUMAN",
  "rev_sp|P63027|VAMP2_HUMAN;tr|K7ENK9|K7ENK9_HUMAN"
))

## End(Not run)

ftwkoopmans/msdap documentation built on March 5, 2025, 12:15 a.m.