regex_classification: Classify an array of strings by regular expression

In ftwkoopmans/msdap: Mass Spectrometry Downstream Analysis Pipeline

Classify an array of strings by regular expression

Description

For example, provide fasta headers and an array of regular expressions to find out which are yeast/human while removing ambigous entries or those matching ecoli: regex = c(human="_HUMA", yeast="_YEAS", discard="_ECOL")

Usage

regex_classification(x, regex, discard_label = "discard")

Arguments

x	array of string where each regex is applied to
regex	named vector of regular expressions. setting proper names is important, these are the classification labels. example: c(human="_HUMA", yeast="_YEAS", discard="_ECOL")
discard_label	default label for classifications that should be discarded downstream. default: "discard"

ftwkoopmans/msdap documentation built on March 5, 2025, 12:15 a.m.