rollup_pep2prot_tmp: rollup a peptide tibble by applying Tukey's median polish...
In ftwkoopmans/msdap: Mass Spectrometry Downstream Analysis Pipeline
rollup_pep2prot_tmp R Documentation
rollup a peptide tibble by applying Tukey's median polish algorithm to all peptides per protein
Description
rollup a peptide tibble by applying Tukey's median polish algorithm to all peptides per protein
Usage
rollup_pep2prot_tmp(tib, intensity_is_log2 = TRUE, return_as_matrix = FALSE)
Arguments
tib
peptide tibble in long-format. Missing values should be set NA, not zero. required columns: peptide_id, protein_id, sample_id, intensity
intensity_is_log2
boolean indicating if input peptide intensities are log2 scaled
return_as_matrix
instead of long-format tibble, return a protein*sample matrix (missing values set to NA)
ftwkoopmans/msdap documentation built on March 5, 2025, 12:15 a.m.
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| rollup_pep2prot_tmp | R Documentation |
rollup a peptide tibble by applying Tukey's median polish algorithm to all peptides per protein
Description
rollup a peptide tibble by applying Tukey's median polish algorithm to all peptides per protein
Usage
rollup_pep2prot_tmp(tib, intensity_is_log2 = TRUE, return_as_matrix = FALSE)
Arguments
tib |
peptide tibble in long-format. Missing values should be set NA, not zero. required columns: peptide_id, protein_id, sample_id, intensity |
intensity_is_log2 |
boolean indicating if input peptide intensities are log2 scaled |
return_as_matrix |
instead of long-format tibble, return a protein*sample matrix (missing values set to NA) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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