summarise_stats__for_contrast: worker function for actual stats summary

In ftwkoopmans/msdap: Mass Spectrometry Downstream Analysis Pipeline

worker function for actual stats summary

Description

worker function for actual stats summary

Usage

summarise_stats__for_contrast(
  dataset,
  return_dea,
  return_diffdetect,
  contr,
  dea_algorithm,
  dea_logfc_as_effectsize,
  diffdetect_zscore_threshold,
  diffdetect_type
)

Arguments

dataset	see summarise_stats()
return_dea	see summarise_stats()
return_diffdetect	see summarise_stats()
contr	contrast for which DD and/or DEA was performed (i.e. valid value in dataset$dd_proteins and dataset$de_proteins)
dea_algorithm	DEA algorithm as used in dea() upstream
dea_logfc_as_effectsize	see summarise_stats()
diffdetect_zscore_threshold	see summarise_stats()
diffdetect_type	see summarise_stats()

ftwkoopmans/msdap documentation built on March 5, 2025, 12:15 a.m.