validate_eset_fitdata: Input validation for eBayes/DEqMS/MS-EmpiRe functions
In ftwkoopmans/msdap: Mass Spectrometry Downstream Analysis Pipeline
View source: R/stats_differential_abundance.R
validate_eset_fitdata R Documentation
Input validation for eBayes/DEqMS/MS-EmpiRe functions
Description
Input validation for eBayes/DEqMS/MS-EmpiRe functions
Usage
validate_eset_fitdata(eset, model_matrix, model_matrix_result_prop)
Arguments
eset
protein/peptide log2 intensity matrix stored as a Biobase ExpressionSet. Must describe protein_id and sample_id in metadata
model_matrix
a stats::model.matrix() result that is supplied to limma::lmFit()
model_matrix_result_prop
the column name in model_matrix that should be returned as the resulting coefficient estimated by eBayes(). In MS-DAP workflows this is typically "condition"
ftwkoopmans/msdap documentation built on March 5, 2025, 12:15 a.m.
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View source: R/stats_differential_abundance.R
| validate_eset_fitdata | R Documentation |
Input validation for eBayes/DEqMS/MS-EmpiRe functions
Description
Input validation for eBayes/DEqMS/MS-EmpiRe functions
Usage
validate_eset_fitdata(eset, model_matrix, model_matrix_result_prop)
Arguments
eset |
protein/peptide log2 intensity matrix stored as a Biobase ExpressionSet. Must describe protein_id and sample_id in metadata |
model_matrix |
a |
model_matrix_result_prop |
the column name in |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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