annotat: Locally aligned the entered sequences with any given...
In furqan915/Epi-gene: EASY HANDLING OF GENOMES
Description
Usage
Arguments
Value
Examples
Description
Locally aligned the entered sequences with any given database.
Usage
1
annotat(inputFiles, database, evalue, id, outputFiles)
Arguments
inputFiles
user defined name of sequences intended to be aligned with fasta format.
database
user defined name of database with fasta format.
evalue
A number e.g. 1E-6, 0.0 etc.
id
A number ranging from 0.3 to 1.
outputFiles
User defined name of the file with txt extension
Value
Locally aligned sequences with their annotations and other particulars in outputFiles.
Examples
1
annotate("sequences.fasta", "keggdatabase.fasta", 1E-6, 0.4 ,"kegg.txt")
furqan915/Epi-gene documentation built on May 18, 2019, 2:34 a.m.
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Description Usage Arguments Value Examples
Description
Locally aligned the entered sequences with any given database.
Usage
1 | annotat(inputFiles, database, evalue, id, outputFiles)
|
Arguments
inputFiles |
user defined name of sequences intended to be aligned with fasta format. |
database |
user defined name of database with fasta format. |
evalue |
A number e.g. 1E-6, 0.0 etc. |
id |
A number ranging from 0.3 to 1. |
outputFiles |
User defined name of the file with txt extension |
Value
Locally aligned sequences with their annotations and other particulars in outputFiles.
Examples
1 | annotate("sequences.fasta", "keggdatabase.fasta", 1E-6, 0.4 ,"kegg.txt")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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