clust_id: Clusters all the genome sequences and returns pan-matrix...
In furqan915/Epi-gene: EASY HANDLING OF GENOMES
Description
Usage
Arguments
Value
Examples
Description
Clusters all the genome sequences and returns pan-matrix based on sequence identity percentage.
Usage
1
clust_id(inputFiles, id, outputFiles)
Arguments
inputFiles
user defined name of previously clustered file with fasta format.
id
A number ranging from 0.5 to 1.
outputFiles
User defined name of the file with fasta extension
Value
Returns a binary pan-matrix file with csv extension e.g. ID_matrix.csv.
Examples
1
clust_id("sorted.fasta", 0.5, "clusters.fasta")
furqan915/Epi-gene documentation built on May 18, 2019, 2:34 a.m.
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Description Usage Arguments Value Examples
Description
Clusters all the genome sequences and returns pan-matrix based on sequence identity percentage.
Usage
1 | clust_id(inputFiles, id, outputFiles)
|
Arguments
inputFiles |
user defined name of previously clustered file with fasta format. |
id |
A number ranging from 0.5 to 1. |
outputFiles |
User defined name of the file with fasta extension |
Value
Returns a binary pan-matrix file with csv extension e.g. ID_matrix.csv.
Examples
1 | clust_id("sorted.fasta", 0.5, "clusters.fasta")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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