Epi-gene: EASY HANDLING OF GENOMES

Description Usage Arguments Value Examples

Relabel the Gene/Genome sequences.

1	relabel(inputFiles, label, outputFiles)

`inputFiles`	user defined name of previously clustered file with fasta format.
`label`	A new number with organims id and gene e.g. org1\|gene.
`outputFiles`	User defined name of the file with fasta extension

Relabels gene/genome sequences in outputFiles.

relabel("organism.fasta", organism|geneno, "relabel.fasta")
for( i in 1:dim(genome.table)[1] ){
cat("Relabelling the fasta sequences", genome.table$Files[i], "...\n")
in.file <- file.path("../concatenate", genome.table$Files[i])
label <- file.path(genome.table$Strains[i])
out.file <- file.path("../relabel", genome.table$Files[i])
relabel(in.file,label,out.file)}