Files in g-antonello/gautils2
Wrapper of my functions to wrangle mostly microbiome data
.Rbuildignore
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.gitignore
DESCRIPTION
NAMESPACE
R/add_N_to_catVar.R
R/add_percent_columns.R
R/bin_integer_into_integer.R
R/clone_dir_structure.R
R/corncob_results_into_list.R
R/date_to_Season.R
R/declutter.envir.R
R/deseq_results_into_list.R
R/get_GEMMA_results.R
R/get_SOLAR_results.R
R/is.nucleotide.R
R/metaphlanData.R
R/metaphlan_to_phyloseq.R
R/open.target.directory.R
R/phy_BasicStats.R
R/phy_OtuMetaTable.R
R/phy_add_metadata_variables.R
R/phy_alpha_div_into_phy_metadata.R
R/phy_barplotTaxa.R
R/phy_betaPlot.R
R/phy_betaPlotTaxon.R
R/phy_beta_div_betw_withn.R
R/phy_drop_NA_vars.R
R/phy_heatmap.R
R/phy_plotTaxon_boxplot.R
R/phy_plotTaxon_hist.R
R/phy_plotTaxon_scatter.R
R/phy_pruneTaxa.R
R/phy_substitute_metadata.R
R/phy_tax_glom.R
R/phy_transform.R
R/phyloseq_to_fasta.R
R/phyloseq_to_picrust2.R
R/qklook.R
R/read_metaml_results_binary.R
R/samp_cond_means_sd.R
R/samp_cond_medians_IQR.R
R/show_palette_colors.R
README.md
data/metaphlanData.RData
gautils2.Rproj
man/add_N_to_catVar.Rd
man/add_percent_columns.Rd
man/bin_integer_into_integer.Rd
man/clone_dir_structure.Rd
man/corncob_results_into_list.Rd
man/date_to_Season.Rd
man/declutter.envir.Rd
man/deseq_results_into_list.Rd
man/get_GEMMA_results.Rd
man/get_SOLAR_results.Rd
man/is.nucleotide.Rd
man/metaphlan_to_phyloseq.Rd
man/open.target.directory.Rd
man/phy_BasicStats.Rd
man/phy_OtuMetaTable.Rd
man/phy_add_metadata_variables.Rd
man/phy_alpha_div_into_phy_metadata.Rd
man/phy_barplotTaxa.Rd
man/phy_betaPlot.Rd
man/phy_betaPlotTaxon.Rd
man/phy_beta_div_betw_withn.Rd
man/phy_drop_NA_vars.Rd
man/phy_heatmap.Rd
man/phy_plotTaxon_boxplot.Rd
man/phy_plotTaxon_hist.Rd
man/phy_plotTaxon_scatter.Rd
man/phy_pruneTaxa.Rd
man/phy_substitute_metadata.Rd
man/phy_tax_glom.Rd
man/phy_transform.Rd
man/phyloseq_to_fasta.Rd
man/phyloseq_to_picrust2.Rd
man/qklook.Rd
man/read_metaml_results_binary.Rd
man/samp_cond_means_sd.Rd
man/samp_cond_medians_IQR.Rd
man/show_palette_colors.Rd
