View source: R/read_metaml_results_binary.R
read_metaml_results_binary | R Documentation |
So far it works only with binary classification using Random Forest, and it assumes the output to have top 25 features too.
read_metaml_results_binary(output_dir, output_prefix)
output_dir |
A |
output_prefix |
A |
A list
containing all statistics divided into "full" and "top25" dataset
##### say you run something like the following code: # python metaml/classification_thomas-manghi.py # input_data/data_ready.txt # input file with all variables needed in rows # output/Exp1 # output prefix # -l rf # type of learning (my function was tested only on rf) # -z s__ # prefix of microbiome- related variables # -mf 0.1 # number of ...? # -nt 1000 # number of trees # -nsl 10 # number of samples per tree leaf # --define 1:varible_of_interest:category_of_interest # the rest becomes 0 # -c entropy # way to estimate the variable importance # -p 10 # number of folds for cross-validation # -r 10 # number of total runs. NB: each run is independent, while folds within a run are not independent # -cc 25 # re-do the analysis with this number of top features, append results on the same files ##### when this is done, go back to R and do: # my_ML_results <- read_metaml_results_binary("output/", "Exp1")
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