corncob_results_into_list: Extract corncob results
In g-antonello/gautils2: Wrapper of my functions to wrangle mostly microbiome data
View source: R/corncob_results_into_list.R
corncob_results_into_list R Documentation
Extract corncob results
Description
An easy wrangling function to extract all results from a corncob differential abundance experiment. NB: so far two things are left to test:
(1) the order of the formulas might be important, and the last term is what this function will extract. (2) Extraction of results for regression against a continuous variable is not available yet
Usage
corncob_results_into_list(res, class = "factor")
Arguments
res
A 'corncob differentialTest' result object. \textbfNB: only analyses with 'phyloseq'objects as input are supported for now.
class
trait
A 'character' vector with the metadata column name to extract the results from.
Value
A 'list' of 'data.frame's with all contrasts applicable against the reference. NB: other pairwise contrasts are not made
g-antonello/gautils2 documentation built on Nov. 28, 2022, 9:39 a.m.
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View source: R/corncob_results_into_list.R
| corncob_results_into_list | R Documentation |
Extract corncob results
Description
An easy wrangling function to extract all results from a corncob differential abundance experiment. NB: so far two things are left to test: (1) the order of the formulas might be important, and the last term is what this function will extract. (2) Extraction of results for regression against a continuous variable is not available yet
Usage
corncob_results_into_list(res, class = "factor")
Arguments
res |
A 'corncob differentialTest' result object. \textbfNB: only analyses with 'phyloseq'objects as input are supported for now. |
class |
|
trait |
A 'character' vector with the metadata column name to extract the results from. |
Value
A 'list' of 'data.frame's with all contrasts applicable against the reference. NB: other pairwise contrasts are not made
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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