add_N_to_catVar | Add sample size to the value |
add_percent_columns | Add percentages to multicolumn tables |
bin_integer_into_integer | Bin an integer/numeric variable |
clone_dir_structure | Clone directory structure (Not working yet) |
corncob_results_into_list | Extract corncob results |
date_to_Season | From date to its season |
declutter.envir | Delete temporary or test objects in 'ls()' |
deseq_results_into_list | From DESeq2 results to a list of data.frames |
get_GEMMA_results | Get Gemma heritability results |
get_SOLAR_results | Get SOLAR results |
is.nucleotide | Is a sequence made of nucleotides? |
metaphlan_to_phyloseq | Create a phyloseq object from Metaphlan profiles |
open.target.directory | Open file/plot directory |
phy_add_metadata_variables | Add metadata variables to a phyloseq |
phy_alpha_div_into_phy_metadata | Add alpha diversities into phyloseq metadata |
phy_barplotTaxa | Barplot taxa (beta) |
phy_BasicStats | Basic Phyloseq stats |
phy_beta_div_betw_withn | Beta diversity into group boxplots |
phy_betaPlot | Easy and Nice MDS Plots |
phy_betaPlotTaxon | Fancy MDS Plots |
phy_drop_NA_vars | Drop NAs from selected variables |
phy_heatmap | Heatmap of microbiota features, NOT EXPORTED, because I... |
phyloseq_to_fasta | Save Refseqs of phyloseq into a .fasta |
phyloseq_to_picrust2 | Phyloseq to Picrust input tables |
phy_OtuMetaTable | merge otu and metadata table |
phy_plotTaxon_boxplot | Boxplot of a taxon |
phy_plotTaxon_hist | Quick histogram of taxa |
phy_plotTaxon_scatter | Scatterplot of a taxon |
phy_pruneTaxa | Remove taxa that have counts summing to n |
phy_substitute_metadata | Substitute a phyloseq metadata with a new data.frame |
phy_tax_glom | Agglomerate at higher taxonomic rank/level |
phy_transform | Transform microbiota counts |
qklook | Glimpse into a table-like object A simple function to make a... |
read_metaml_results_binary | Read MetaML binary classification output |
samp_cond_means_sd | Create Sample conditional means and standard deviation |
samp_cond_medians_IQR | Create Sample conditional means and standard deviation |
show_palette_colors | View the colors of a HTML list |
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