getLODProfile: Get LOD profile.

In gact/shmootl: QTL Analysis Utilities for Yeast

Description

Get LOD profile.

Usage

## Generic method.
getLODProfile(x, ...)

## S3 method for class 'data.frame'
getLODProfile(x, lodcolumn = NULL, ...)

## S3 method for class 'qtl'
getLODProfile(x, qtl.index = NULL, ...)

## S3 method for class 'scantwo'
getLODProfile(x, lodcolumn = NULL, ...)

Arguments

x	Object containing single-QTL LOD profile data.
...	Further arguments (see below).
lodcolumn	In a scanone or equivalent object, this parameter indicates which LOD column to consider. In other objects with LOD-column-associated elements, this parameter indicates which LOD-column-associated element to consider. This must be either a LOD column name or an index with respect to the set of LOD columns. If no LOD column is specified and one such column is found, that column is used by default; otherwise a LOD column must be specified.
qtl.index	In a qtl object, this indicates the QTL for which a LOD profile should be returned.

Value

A scanone object containing a LOD profile for a single phenotype.

gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.