Description Usage Arguments Value References See Also
View source: R/batchScanoneF.R
Run funqtl::scanoneF
on a batch of permuted cross
objects.
1 2 |
cross |
An R/qtl |
pheno.col |
Phenotype columns for which QTL analysis should be performed. If specified, phenotypes should contain measurements for consecutive values of the parameter of the function-valued trait (e.g. times). If no phenotypes are specified, all are used. |
n.cluster |
Number of nodes to request for parallel execution. Any
number of processes can be requested with the argument |
iseed |
Seed for random number generator. |
n.perm |
Number of permutations. |
perm.pheno |
Permute phenotype data. |
perm.geno |
Permute genotype data. |
... |
Additional keyword arguments passed to |
A scanoneperm
matrix containing the results of scanoneF
for all permutations.
Broman KW, Wu H, Sen S, Churchill GA (2003) R/qtl: QTL mapping in experimental crosses. Bioinformatics 19:889-890. (PubMed)
Kwak IY, Moore CR, Spalding EP, Broman KW (2014) A simple regression-based method to map quantitative trait loci underlying function-valued phenotypes. Genetics 197(4):1409-16. (PubMed)
Other scan utility functions: batchPermScanone
,
batchPermScantwoF
,
batchPermScantwo
,
batchPhenoScanone
,
batchPhenoScantwo
, batchScan
,
nodePermScanoneF
,
nodePermScanone
,
nodePermScantwoF
,
nodePermScantwo
,
nodePhenoScanone
,
nodePhenoScantwo
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