nodePermScantwo: Run 'qtl::scantwo' on a single permuted 'cross' object.

In gact/shmootl: QTL Analysis Utilities for Yeast

Description

Run qtl::scantwo on a single permuted cross object.

Usage

nodePermScantwo(perm.id, cross, pheno.col = NULL, perm.pheno = TRUE,
  perm.geno = FALSE, ...)

Arguments

perm.id	Permutation index.
cross	An R/qtl cross object.
pheno.col	Phenotype columns for which QTL analysis should be run. If no phenotypes are specified, all are used.
perm.pheno	Permute phenotype data.
perm.geno	Permute genotype data.
...	Additional keyword arguments passed to scantwo.

Value

A scantwoperm matrix containing the result of the QTL scan for a single permutation.

References

Broman KW, Wu H, Sen S, Churchill GA (2003) R/qtl: QTL mapping in experimental crosses. Bioinformatics 19:889-890. (PubMed)

See Also

Other scan utility functions: batchPermScanoneF, batchPermScanone, batchPermScantwoF, batchPermScantwo, batchPhenoScanone, batchPhenoScantwo, batchScan, nodePermScanoneF, nodePermScanone, nodePermScantwoF, nodePhenoScanone, nodePhenoScantwo

gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.