findFlanking: Find map loci flanking map positions.

In gact/shmootl: QTL Analysis Utilities for Yeast

Description

Find map loci flanking map positions.

Usage

findFlanking(x, loc, expandtomarkers = FALSE)

## S3 method for class 'map'
findFlanking(x, loc, expandtomarkers = FALSE)

## S3 method for class 'mapframe'
findFlanking(x, loc, expandtomarkers = FALSE)

## S3 method for class 'scanone'
findFlanking(x, loc, expandtomarkers = FALSE)

Arguments

x	Object containing map data.
loc	Locus mapframe specifying map positions.
expandtomarkers	Expand the flanking interval to the nearest flanking markers, or to the respective terminal loci.

Value

A mapframe containing two loci marking respectively the lower and upper limit of the flanking interval.

See Also

Other map utility functions: as.data.frame.mapframe, as.data.frame.map, as.mapframe, as.map, extractMarkers, extractPseudomarkers, findLoci, findMarkers, getMapSteps, getMapUnit, gmapframe, hasMapCSV, inMapOrder, inferMapStep, mapframe, mapsEqual, orderMap, readMapCSV, readMapHDF5, readMapframeCSV, setMapUnit, writeMapCSV, writeMapHDF5, writeMapframeCSV

gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.