mapsEqual: Test if two 'R/qtl' 'map' objects are essentially equal.

In gact/shmootl: QTL Analysis Utilities for Yeast

Description

This is based on the R/qtl function comparecrosses, and checks that two input map objects are essentially equal, having identical reference sequences, marker names, map unit, and map positions (within the given numeric tolerance).

Usage

mapsEqual(map1, map2, tol = 1e-05)

Arguments

map1	An R/qtl map object.
map2	An R/qtl map object.
tol	Numeric tolerance for comparing map positions.

Value

Returns TRUE if the two input map objects are identical within the given tolerance. Otherwise, this function returns a character vector listing observed differences between the two map objects.

See Also

R/qtl manual

Other map utility functions: as.data.frame.mapframe, as.data.frame.map, as.mapframe, as.map, extractMarkers, extractPseudomarkers, findFlanking, findLoci, findMarkers, getMapSteps, getMapUnit, gmapframe, hasMapCSV, inMapOrder, inferMapStep, mapframe, orderMap, readMapCSV, readMapHDF5, readMapframeCSV, setMapUnit, writeMapCSV, writeMapHDF5, writeMapframeCSV

gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.