nodePermScantwoF: Run 'funqtl::scantwoF' on a single permutation of a 'cross'...

In gact/shmootl: QTL Analysis Utilities for Yeast

Description

Run funqtl::scantwoF on a single permutation of a cross object.

Usage

nodePermScantwoF(perm.id, cross, pheno.col = NULL, perm.pheno = TRUE,
  perm.geno = FALSE, ...)

Arguments

perm.id	Permutation index.
cross	An R/qtl cross object.
pheno.col	Phenotype columns for which QTL analysis should be performed. If specified, phenotypes should contain measurements for consecutive values of the parameter of the function-valued trait (e.g. times). If no phenotypes are specified, all are used.
perm.pheno	Permute phenotype data.
perm.geno	Permute genotype data.
...	Additional keyword arguments passed to scantwoF.

Value

A scantwoperm list containing the results of scantwoF for a single permutation.

References

Broman KW, Wu H, Sen S, Churchill GA (2003) R/qtl: QTL mapping in experimental crosses. Bioinformatics 19:889-890. (PubMed)

Kwak IY, Moore CR, Spalding EP, Broman KW (2014) A simple regression-based method to map quantitative trait loci underlying function-valued phenotypes. Genetics 197(4):1409-16. (PubMed)

See Also

Other scan utility functions: batchPermScanoneF, batchPermScanone, batchPermScantwoF, batchPermScantwo, batchPhenoScanone, batchPhenoScantwo, batchScan, nodePermScanoneF, nodePermScanone, nodePermScantwo, nodePhenoScanone, nodePhenoScantwo

gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.