getSeqMarkers-methods: Get markers by sequence.

In gact/shmootl: QTL Analysis Utilities for Yeast

Description

Get markers by sequence.

Usage

getSeqMarkers(cross.info, sequences = NULL, simplify = FALSE)

## S4 method for signature 'CrossInfo'
getSeqMarkers(cross.info, sequences = NULL,
  simplify = FALSE)

Arguments

cross.info	A CrossInfo object.
sequences	Vector indicating sequences to consider. Sequences may alternatively be specified by a logical vector. If none are specified, results are returned for all sequences.
simplify	Simplify list return value to a vector.

Value

List of character vectors, each containing the marker IDs corresponding to a given sequence. If option simplify is TRUE, this is simplified to a vector. Returns NULL if no sequence-marker information is available.

See Also

Other CrossInfo methods: getAlleles, getCrosstype, getGenotypes, getMarkerIndices, getMarkerNames, getMarkerSeqs, getMarkers, getNumMarkers, getNumPhenotypes, getNumSamples, getNumSeqs, getPhenotypeIndices, getPhenotypeNames, getPhenotypes, getSampleIndices, getSampleNames, getSamples, getSeqIndices, getSeqNames, getSequences, getStrainIndices, getTetradIndices, hasMarkerSeqs, hasSampleIDs, hasStrainIndices, hasTetradIndices, setAlleles, setCrosstype, setGenotypes, setMarkerSeqs, setMarkers, setPhenotypes, setSamples, setSequences, setStrainIndices, setTetradIndices

gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.