makeFounderGenoMatrix: Make founder genotype matrix from genotype data.

In gact/shmootl: QTL Analysis Utilities for Yeast

Description

Given input genotype data for cross segregant samples and their founder strains, this function assigns a genotype symbol to each locus according to the inferred combination of founder alleles.

Usage

makeFounderGenoMatrix(x, y, alleles = NULL)

Arguments

x	Raw sample genotype array.
y	Raw founder genotype array.
alleles	Mapping of founder sample IDs to founder allele symbols.

Value

A founder genotype matrix, with genotypes encoded as integers and their corresponding genotype symbols in the attribute 'genotypes'.

gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.