writeWorkbookExcel: Write an Excel workbook of QTL analysis results.

Description Usage Arguments

View source: R/excel.R

Description

Write an Excel workbook of QTL analysis results.

Usage

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writeWorkbookExcel(scanfiles, workbook, phenotypes = NULL, analyses = NULL,
  worksheets = NULL, scanfile.pattern = NULL)

Arguments

scanfiles

One or more QTL scan result HDF5 files.

workbook

Path of output Excel file.

phenotypes

Phenotypes for which results should be included in the output file. If none are specified, results are output for all phenotypes.

analyses

Analyses for which results should be included in the output file. If none are specified, results are output for all available analyses.

worksheets

Worksheets to include in the output file. If none are specified, default worksheets are output. To view available worksheets, call the function listWorksheets.

scanfile.pattern

Pattern for extracting experiment info from scan file names. This must be a valid Perl regex with named capture groups. Neither the capture groups nor the pattern itself are required to match any given scan file, but all capture groups must have a name, and that name cannot clash with other names that might be used alongside the extracted information.


gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.