revdep/checks.noindex/insight/old/insight.Rcheck/tests/testthat/test-gls.R

In gbm-developers/gbm: Generalized Boosted Regression Models

if (require("testthat") &&
  require("insight") &&
  require("nlme")) {
  data(Ovary)
  m1 <- gls(follicles ~ sin(2 * pi * Time) + cos(2 * pi * Time),
    Ovary,
    correlation = corAR1(form = ~ 1 | Mare)
  )

  test_that("model_info", {
    expect_true(model_info(m1)$is_linear)
  })

  test_that("find_predictors", {
    expect_identical(
      find_predictors(m1),
      list(conditional = "Time", correlation = "Mare")
    )
    expect_identical(find_predictors(m1, flatten = TRUE), c("Time", "Mare"))
    expect_null(find_predictors(m1, effects = "random"))
  })

  test_that("find_response", {
    expect_identical(find_response(m1), "follicles")
  })

  test_that("link_inverse", {
    expect_equal(link_inverse(m1)(.2), .2, tolerance = 1e-5)
  })

  test_that("get_data", {
    expect_equal(nrow(get_data(m1)), 308)
    expect_equal(colnames(get_data(m1)), c("Mare", "Time", "follicles"))
  })

  test_that("find_formula", {
    expect_length(find_formula(m1), 2)
    expect_equal(
      find_formula(m1),
      list(
        conditional = as.formula("follicles ~ sin(2 * pi * Time) + cos(2 * pi * Time)"),
        correlation = as.formula("~1 | Mare")
      )
    )
  })

  test_that("find_terms", {
    expect_equal(
      find_terms(m1),
      list(
        response = "follicles",
        conditional = c("sin(2 * pi * Time)", "cos(2 * pi * Time)"),
        correlation = c("1", "Mare")
      )
    )
    expect_equal(
      find_terms(m1, flatten = TRUE),
      c(
        "follicles",
        "sin(2 * pi * Time)",
        "cos(2 * pi * Time)",
        "1",
        "Mare"
      )
    )
  })

  test_that("find_variables", {
    expect_equal(
      find_variables(m1),
      list(
        response = "follicles",
        conditional = "Time",
        correlation = "Mare"
      )
    )
    expect_equal(
      find_variables(m1, flatten = TRUE),
      c("follicles", "Time", "Mare")
    )
  })

  test_that("n_obs", {
    expect_equal(n_obs(m1), 308)
  })

  test_that("linkfun", {
    expect_false(is.null(link_function(m1)))
  })

  test_that("find_parameters", {
    expect_equal(
      find_parameters(m1),
      list(
        conditional = c("(Intercept)", "sin(2 * pi * Time)", "cos(2 * pi * Time)")
      )
    )
    expect_equal(nrow(get_parameters(m1)), 3)
    expect_equal(
      get_parameters(m1)$Parameter,
      c("(Intercept)", "sin(2 * pi * Time)", "cos(2 * pi * Time)")
    )
  })

  test_that("is_multivariate", {
    expect_false(is_multivariate(m1))
  })

  test_that("find_statistic", {
    expect_identical(find_statistic(m1), "t-statistic")
  })
}