Axt-util: Utility functions related to Axt alignment

In ge11232002/CNEr: CNE Detection and Visualization

Utility functions related to Axt alignment

Description

A collection of different functions used to deal with Axt object.

Usage

  summary(object, ...) ## mismatch number and proportion

Arguments

object	An Axt object
...	Currently not used.

Value

A table object with the counts of mismatches, insertions, deletions and the matches of each base.

Author(s)

Ge Tan

Examples

  axtFilesHg38DanRer10 <- file.path(system.file("extdata", package="CNEr"),
                                   "hg38.danRer10.net.axt")
  axtHg38DanRer10 <- readAxt(axtFilesHg38DanRer10)
  summary(axtHg38DanRer10)

ge11232002/CNEr documentation built on Oct. 26, 2022, 7:08 p.m.