fetchChromSizes: fetchChromSizes function.
In ge11232002/CNEr: CNE Detection and Visualization
fetchChromSizes R Documentation
fetchChromSizes function.
Description
This function tries to automate the fetch of chromosome sizes for assemblies
from UCSC.
Usage
fetchChromSizes(assembly)
Arguments
assembly
A character object: the canonical name of assembly,
i.e., ‘hg19’ for UCSC.
Details
This function downloads ‘chromInfo.txt.gz’ from UCSC golden path
for UCSC assemblies.
Value
A object of Seqinfo is returned.
Note
Currently, the assemblies from UCSC are supported.
Author(s)
Ge Tan
Examples
fetchChromSizes("hg19")
fetchChromSizes("mm10")
ge11232002/CNEr documentation built on Oct. 26, 2022, 7:08 p.m.
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| fetchChromSizes | R Documentation |
fetchChromSizes function.
Description
This function tries to automate the fetch of chromosome sizes for assemblies from UCSC.
Usage
fetchChromSizes(assembly)
Arguments
assembly |
A |
Details
This function downloads ‘chromInfo.txt.gz’ from UCSC golden path for UCSC assemblies.
Value
A object of Seqinfo is returned.
Note
Currently, the assemblies from UCSC are supported.
Author(s)
Ge Tan
Examples
fetchChromSizes("hg19")
fetchChromSizes("mm10")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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