read.rmMask.GRanges: Read a RepeatMasker .out file
In ge11232002/CNEr: CNE Detection and Visualization
read.rmMask.GRanges R Documentation
Read a RepeatMasker .out file
Description
Read a RepeatMasker .out file into a GRanges object.
Usage
read.rmMask.GRanges(fn)
Arguments
fn
character(1): the filename of a RepeatMasker .out file.
Value
A GRanges object with metadata columns containing the
name of the matching interspersed repeat,
the class of the repeat and the Smith-Waterman score of the match.
Author(s)
Ge Tan
References
http://www.repeatmasker.org/webrepeatmaskerhelp.html
Examples
fn <- system.file("extdata", "ce2chrM.fa.out", package="IRanges")
read.rmMask.GRanges(fn)
ge11232002/CNEr documentation built on Oct. 26, 2022, 7:08 p.m.
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| read.rmMask.GRanges | R Documentation |
Read a RepeatMasker .out file
Description
Read a RepeatMasker .out file into a GRanges object.
Usage
read.rmMask.GRanges(fn)
Arguments
fn |
|
Value
A GRanges object with metadata columns containing the
name of the matching interspersed repeat,
the class of the repeat and the Smith-Waterman score of the match.
Author(s)
Ge Tan
References
http://www.repeatmasker.org/webrepeatmaskerhelp.html
Examples
fn <- system.file("extdata", "ce2chrM.fa.out", package="IRanges")
read.rmMask.GRanges(fn)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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