makeAncoraFiles: makeAncoraFiles

In ge11232002/CNEr: CNE Detection and Visualization

makeAncoraFiles

Description

Make ancora format files from GRangePairs of CNE

Usage

  makeAncoraFiles(cne, outputDir = ".", 
                  genomeFirst = "first", genomeSecond = "second",
                  threshold = "50_50")

Arguments

cne	GRangePairs object of CNE.
outputDir	character(1): the output directory of ‘Bed’ and ‘BigWig’ files.
genomeFirst,genomeSecond	character(1): the genome name of the first and second species.
threshold	character(1): the threshold used to identify the CNEs in the format of "50_50" etc

Value

The filenames of output.

Note

This function is mainly for internal use in Lenhard group.

Author(s)

Ge Tan

See Also

readAncora

Examples

  data(cneFinalListDanRer10Hg38)
  cne <- CNEFinal(cneFinalListDanRer10Hg38[["45_50"]])
  makeAncoraFiles(cne, genomeFirst = "danRer10", genomeSecond = "hg38",
                  threshold = "45_50")

ge11232002/CNEr documentation built on Oct. 26, 2022, 7:08 p.m.