read.rmskFasta: Read a soft repeat masked fasta
In ge11232002/CNEr: CNE Detection and Visualization
read.rmskFasta R Documentation
Read a soft repeat masked fasta
Description
Read a soft repeat masked fasta file into a GRanges object.
Usage
read.rmskFasta(fn)
Arguments
fn
character(1): The filename of the soft repeat masked fasta.
Details
Only the lower case based ("a", "c", "g", "t") are considered in the
soft repeat masked fasta.
Value
GRanges object with coordinates of repeat masked regions.
Author(s)
Ge Tan
See Also
read.rmMask.GRanges
Examples
fn <- file.path(system.file("extdata", package="CNEr"),
"rmsk.fa")
read.rmskFasta(fn)
ge11232002/CNEr documentation built on Oct. 26, 2022, 7:08 p.m.
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| read.rmskFasta | R Documentation |
Read a soft repeat masked fasta
Description
Read a soft repeat masked fasta file into a GRanges object.
Usage
read.rmskFasta(fn)
Arguments
fn |
|
Details
Only the lower case based ("a", "c", "g", "t") are considered in the soft repeat masked fasta.
Value
GRanges object with coordinates of repeat masked regions.
Author(s)
Ge Tan
See Also
read.rmMask.GRanges
Examples
fn <- file.path(system.file("extdata", package="CNEr"),
"rmsk.fa")
read.rmskFasta(fn)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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