get.data.structure: Read the observed data to get the simulation parameters; base...
In gehara/PipeMaster: Building and Simulating Coalescent models.
View source: R/get.data.structure.R
get.data.structure R Documentation
Read the observed data to get the simulation parameters; base pairs and number of individuals per population.
Description
Read the observed data to get the simulation parameters; base pairs and number of individuals per population.
Usage
get.data.structure(model, path.to.fasta, pop.assign, sanger = F)
Arguments
model
A model object generated with main.menu function.
path.to.fasta
path to the fasta alignments directory.
pop.assign
a two column data frame with poppulation assignemt of individuals. First column must have the samples name, the secound column the population in numbers, 1 for pop1, 2 for pop2 etc.
sanger
logical. If TRUE the inheritance scalar and mutation rates set up in the main.menu are kept. If FALSE the mutation rate is propagated to all loci. Defaut is FALSE.
Value
Model object with updated gene parameters.
Author(s)
Marcelo Gehara
gehara/PipeMaster documentation built on April 19, 2024, 8:14 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/get.data.structure.R
| get.data.structure | R Documentation |
Read the observed data to get the simulation parameters; base pairs and number of individuals per population.
Description
Read the observed data to get the simulation parameters; base pairs and number of individuals per population.
Usage
get.data.structure(model, path.to.fasta, pop.assign, sanger = F)
Arguments
model |
A model object generated with main.menu function. |
path.to.fasta |
path to the fasta alignments directory. |
pop.assign |
a two column data frame with poppulation assignemt of individuals. First column must have the samples name, the secound column the population in numbers, 1 for pop1, 2 for pop2 etc. |
sanger |
logical. If TRUE the inheritance scalar and mutation rates set up in the main.menu are kept. If FALSE the mutation rate is propagated to all loci. Defaut is FALSE. |
Value
Model object with updated gene parameters.
Author(s)
Marcelo Gehara
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.