View source: R/observed.coexp.sumstat.R
observed.coexp.sumstat | R Documentation |
This function calculates the hippersummary statistics for a collection of fasta files present in a particular folder. It is instended to be used for codemographic inference in conjunction with simulations generated by sim.coexp or sim.coexp2. Here the same stats are calculated.
observed.coexp.sumstat(path.to.fasta)
path.to.fasta |
The path to the directory containing the fasta files for all species/populations. |
A list of hippersummary statistics.
Marcelo Gehara
Gehara M., Garda A.A., Werneck F.P., Oliveira E.F., da Fonseca E.M., Camurugi F., Magalhães F. de M., Lanna F.M., Sites J.W., Marques R., Silveira-Filho R., São Pedro V.A., Colli G.R., Costa G.C., & Burbrink F.T. (2017) Estimating synchronous demographic changes across populations using hABC and its application for a herpetological community from northeastern Brazil. Molecular Ecology, 26, 4756–4771.
Chan Y.L., Schanzenbach D., & Hickerson M.J. (2014) Detecting concerted demographic response across community assemblages using hierarchical approximate Bayesian computation. Molecular Biology and Evolution, 31, 2501–2515.
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