observed.coexp.sumstat: Observed codemographic hippersummary statistics calculation

View source: R/observed.coexp.sumstat.R

observed.coexp.sumstatR Documentation

Observed codemographic hippersummary statistics calculation

Description

This function calculates the hippersummary statistics for a collection of fasta files present in a particular folder. It is instended to be used for codemographic inference in conjunction with simulations generated by sim.coexp or sim.coexp2. Here the same stats are calculated.

Usage

observed.coexp.sumstat(path.to.fasta)

Arguments

path.to.fasta

The path to the directory containing the fasta files for all species/populations.

Value

A list of hippersummary statistics.

Author(s)

Marcelo Gehara

References

Gehara M., Garda A.A., Werneck F.P., Oliveira E.F., da Fonseca E.M., Camurugi F., Magalhães F. de M., Lanna F.M., Sites J.W., Marques R., Silveira-Filho R., São Pedro V.A., Colli G.R., Costa G.C., & Burbrink F.T. (2017) Estimating synchronous demographic changes across populations using hABC and its application for a herpetological community from northeastern Brazil. Molecular Ecology, 26, 4756–4771.

Chan Y.L., Schanzenbach D., & Hickerson M.J. (2014) Detecting concerted demographic response across community assemblages using hierarchical approximate Bayesian computation. Molecular Biology and Evolution, 31, 2501–2515.


gehara/PipeMaster documentation built on April 19, 2024, 8:14 a.m.