API for gehara/PipeMaster
Building and Simulating Coalescent models.

Global functions
H.div Man page Source code
PipeMaster Man page
PipeMaster-package Man page
anc.Ne.par Source code
anc.mig.par Source code
coexp.MS Source code
coexp.sample.pars Source code
coexp.sample.pars.pulses Source code
coexp.sample.pars2 Source code
coexp.sumstat Source code
condition.matrix Source code
condition.menu Source code
cur.Ne.par Source code
demog.menu Source code
demog.sample.pars Source code
eval.condition Source code
fas2ms2 Source code
fasta.snp.2ms Source code
fasta2ms Source code
gene.menu Source code
genomic.menu Source code
genomic.par Source code
genomic.samples.par Source code
get.NGSdata.structure Source code
get.locfile Source code
get.model Source code
get.msABC Source code
get.node Source code
get.pops Source code
get.ss.pop.name Source code
get.time Source code
get.tree.info Man page Source code
getrid Source code
inv.mirror.lower Source code
inv.mirror.upper Source code
join.par Source code
loci.par Source code
main.menu Man page Source code
mig.menu Source code
mig.par Source code
ms.commander.snp Source code
ms.commander2 Source code
ms.string.generator Source code
ms.to.DNAbin Man page Source code
msABC.commander Source code
obs.sumstat.ngs Man page Source code
observed.coexp.sumstat Man page Source code
observed.demog.sumstat Man page Source code
observed.pw.distances Man page Source code
observed.sumstat Man page Source code
parallel.sims Source code
place.mig.condition Source code
place.size.condition Source code
place.time.condition Source code
plot.sim.obs Man page Source code
print.condition.menu Source code
print.demog.menu Source code
print.gene.menu Source code
print.genomic.menu Source code
print.main.menu Source code
print.mig.menu Source code
print.time.menu Source code
read.model.input Source code
remove.all.par Source code
sample.mu.rates Source code
sample.pars Source code
sample.w.cond Source code
samples.par Source code
sim.coaltrees Man page Source code
sim.coexp Man page Source code
sim.coexp.pulses Source code
sim.coexp2 Man page Source code
sim.demog Source code
sim.msABC Source code
sim.msABC.sumstat Man page Source code
sim.sp.tree Man page Source code
sim.sumstat Man page Source code
single.pop.demog Man page Source code
sumstat Source code
switch.condition.menu Source code
switch.demog.menu Source code
switch.gene.menu Source code
switch.genomic.menu Source code
switch.main.menu Source code
switch.mig.menu Source code
switch.time.menu Source code
taxons.to.numbers Source code
time.menu Source code
gehara/PipeMaster documentation built on June 26, 2018, 10:32 p.m.