observed.singlepop.sumstat: Observed summary statistics calculation for single pop...
In gehara/PipeMaster: Building and Simulating Coalescent models.
View source: R/observed.demog.sumstat.R
observed.singlepop.sumstat R Documentation
Observed summary statistics calculation for single pop demography
Description
This function calculates the summary statistics for each fasta file present in a particular folder. This calculates the observed for simulations with the single.pop.demog function.
Usage
observed.singlepop.sumstat(path.to.fasta)
Arguments
path.to.fasta
The path to the directory containing the fasta files for all species/populations.
Value
A table of summary statistics.
Author(s)
Marcelo Gehara
References
Gehara M., Garda A.A., Werneck F.P., Oliveira E.F., da Fonseca E.M., Camurugi F., Magalhães F. de M., Lanna F.M., Sites J.W., Marques R., Silveira-Filho R., São Pedro V.A., Colli G.R., Costa G.C., & Burbrink F.T. (2017) Estimating synchronous demographic changes across populations using hABC and its application for a herpetological community from northeastern Brazil. Molecular Ecology, 26, 4756–4771.
gehara/PipeMaster documentation built on April 19, 2024, 8:14 a.m.
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View source: R/observed.demog.sumstat.R
| observed.singlepop.sumstat | R Documentation |
Observed summary statistics calculation for single pop demography
Description
This function calculates the summary statistics for each fasta file present in a particular folder. This calculates the observed for simulations with the single.pop.demog function.
Usage
observed.singlepop.sumstat(path.to.fasta)
Arguments
path.to.fasta |
The path to the directory containing the fasta files for all species/populations. |
Value
A table of summary statistics.
Author(s)
Marcelo Gehara
References
Gehara M., Garda A.A., Werneck F.P., Oliveira E.F., da Fonseca E.M., Camurugi F., Magalhães F. de M., Lanna F.M., Sites J.W., Marques R., Silveira-Filho R., São Pedro V.A., Colli G.R., Costa G.C., & Burbrink F.T. (2017) Estimating synchronous demographic changes across populations using hABC and its application for a herpetological community from northeastern Brazil. Molecular Ecology, 26, 4756–4771.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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