Man pages for genejockey33000/typGumbo
Scripts and Pipelines for RNAseq Analysis
| addGeneNames | Add Gene Names |
| allDuplicated | All Duplicated Return logical vector marking any value that... |
| auto.rats | Autosomal Ratios (auto.rats) |
| BenRichment | Gene Ontology Enrichment on data frame of gene symbols |
| cleanTT | Clean Test table |
| cleanXM | Expression matrix cleaning tool |
| CompPairwiseCorMat | Comprehensive test of Pair-wise Correlation Parameters |
| CorMat | Matrix Correlations, all to all (CorMat) |
| corrdot | Make a linear regression dot plot of two vectors in a matrix |
| CorVMatSig | Correlate vector to matrix and test significance |
| DEbyClust | Cluster-wise test for DEGs of Seurat Object |
| filt | Filter Data |
| flattenCorrMatrix | Flat matrix from Hmisc::rcorr list output Takes the r value... |
| gcn | Gene Concept Network Plot Simple generator of gene concept... |
| getEnsGeneMaps | Get Current Ensembl Gene Maps |
| m2mCorrPlot | Dot matrix of Correlations |
| mkEnrich | Make Gene Ontology Enrichment Object |
| NAMprep | NAM prep Running the NAMscore function on a Seurat object... |
| NAMscore | NAM (iN, Ast, iMGL) Score Generator |
| noNANA | Removes rows with any NA values |
| noNANAtt | Sleuth Test table filter, removes NA rows and unmapped genes |
| odds2of3 | Odds of passing 2 out of 3 Comparisons |
| pairwiseCorSkew | pairwiseCorSkew |
| platelabs | Plate labels |
| quantNorm | Quantile Normalization of Expression (RNAseq) data |
| quickPCA | Quick PCA |
| rCompare | Overlay Waterfall plot of pos and negative correlations Takes... |
| seahorseImport | Seahorse Data import |
| sniff | Quick peek (sniff) of typ objects |
| stickem | Combine two numeric matrices with overlapping samples |
| syn.smooth | Synaptic Smoothing pipeline |
| TrimEnrich | Trim mkEnrich() results |
| tsne | TSNE Plot Maker: Copied from M3C |
| typ.filt | Filter typ Object Expression Data |
| ViewEnrich | View GO Enrichment Results simple viewer of significantly... |
| vulcan | Vulcan: Generate easy volcano plots from sleuth results test... |
