typ.filt: Filter typ Object Expression Data

In genejockey33000/typGumbo: Scripts and Pipelines for RNAseq Analysis

Filter typ Object Expression Data

Description

Custom filtering of typ objects using either k over a, minimum average expression, or highest x measurements (based on average expression)

Usage

typ.filt(
  typ.obj,
  type = c("k.over.a", "min.mean", "top.x"),
  k = NULL,
  a = NULL,
  min = NULL,
  x = NULL
)

Arguments

typ.obj	expression object created with 'make.typ()' function
type	c("k.over.a","min.mean", ""top.x") can apply multiple
k	number of samples required to have 'a' expression level
a	expression level required
min	minimum average expression
x	number of top measurements to return

Value

typ object same as entered but with filtered data and info detailing the filtering parameters

genejockey33000/typGumbo documentation built on July 20, 2023, 11:45 p.m.