gcn: Gene Concept Network Plot Simple generator of gene concept...

In genejockey33000/typGumbo: Scripts and Pipelines for RNAseq Analysis

Gene Concept Network Plot Simple generator of gene concept network plots using enrichment object

Description

Gene Concept Network Plot Simple generator of gene concept network plots using enrichment object

Usage

gcn(
  x,
  nodes = 5,
  label.size = "medium",
  category.labels = TRUE,
  circle = FALSE,
  color.lines = TRUE
)

Arguments

x	enrichment object output from running mkEnrich
nodes	number of nodes (enriched pathways) to plot. default is 4
label.size	How large to make the gene labels (none, teeny, small, medium, large)
category.labels	LOGICAL. Should category (i.e. node or module labels) be printed (default=TRUE)
circle	Logical. Should the plot be constrained to a circle (default=FALSE)
color.lines	Logical. Should the lines be colored by gene set? (default=FALSE)

Value

GCN plot

genejockey33000/typGumbo documentation built on July 20, 2023, 11:45 p.m.