NAMprep: NAM prep Running the NAMscore function on a Seurat object...

In genejockey33000/typGumbo: Scripts and Pipelines for RNAseq Analysis

NAM prep Running the NAMscore function on a Seurat object uses the scale.data slot If Scale() was only run on the most variable features (default) rather than all features then many of the key markers could be lost (especially if one cell type is over-represented). NAM prep process a Seurat object to run the ScaleData() function on all features rather than only the 2000 most variable. Can take a while.

Description

NAM prep Running the NAMscore function on a Seurat object uses the scale.data slot If Scale() was only run on the most variable features (default) rather than all features then many of the key markers could be lost (especially if one cell type is over-represented). NAM prep process a Seurat object to run the ScaleData() function on all features rather than only the 2000 most variable. Can take a while.

Usage

NAMprep(object)

Arguments

object

Seurat object

genejockey33000/typGumbo documentation built on July 20, 2023, 11:45 p.m.