getEnsGeneMaps: Get Current Ensembl Gene Maps

In genejockey33000/typGumbo: Scripts and Pipelines for RNAseq Analysis

Get Current Ensembl Gene Maps

Description

Returns a data frame for mapping specified genetic identifiers. For use with human data only.

Usage

getEnsGeneMaps(type = c("full", "t2g", "t2n", "g2n", "g2e", "n2e"))

Arguments

type

Indicate type of map desired. c("full", "t2g", "t2n", "g2n", "g2e", "n2e") "full" = full map containing Ensemble transcript IDs (ENSTs), gene IDs (ENSGs), external gene names (symbols), and Entrez IDs (####) full map will contain NAs where identifiers don't have mapped counterparts "t2g" = ENST and ENSG "t2n" = ENST and gene names (symbols) "g2n" = ENSGs and gene names (symbols) "g2e" = ENSGs and Entrez IDs "n2e" = gene names (symbols) and Entrez IDs

Value

specified gene map

genejockey33000/typGumbo documentation built on July 20, 2023, 11:45 p.m.