QCmetrics-methods: Retrieve consolidated set of QC metrics

In genialis/ChIPQC: Quality metrics for ChIPseq data

Retrieve consolidated set of QC metrics

Description

Retrieves a consolidated set of QC metrics.

Methods

signature(object = "ChIPQCexperiment")

Retrieves a matrix of QC metrics for all the samples in an experiment, with a column of values for each sample.

signature(object = "list")

Retrieves a matrix of QC metrics for all the samples in a list of ChIPQCsample objects, with a column of values for each sample.

signature(object = "ChIPQCsample")

Retrieves a vector of QC metrics for a sample.

Author(s)

Rory Stark and Thomas Carroll

See Also

ChIPQC-package, ChIPQCsample, ChIPQCexperiment

Examples

data(example_QCexperiment)
QCmetrics(exampleExp)

data(tamoxifen_QC)
QCmetrics(tamoxifen)

QCmetrics(QCsample(tamoxifen,1))

genialis/ChIPQC documentation built on May 24, 2022, 5:24 p.m.