peaks-methods: Retrieve peaks

In genialis/ChIPQC: Quality metrics for ChIPseq data

Retrieve peaks

Description

Retrieve peaks.

Methods

signature(object = "ChIPQCexperiment")

Retrieve a GRangesList of the peaks associated with all the samples in an experiment.

signature(object = "list")

Retrieve a GRangesList of the peaks associated with all the samples in a list of ChIPQCsample objects.

signature(object = "ChIPQCsample")

Retrieve a GRanges object containing the peaks associated with a sample.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
expPeaks = peaks(exampleExp)
length(expPeaks)
peaks(QCsample(exampleExp,1))

genialis/ChIPQC documentation built on May 24, 2022, 5:24 p.m.