RelativeCrossCoverage-methods: Retrieve the relative cross coverage values for a range of...

In genialis/ChIPQC: Quality metrics for ChIPseq data

Retrieve the relative cross coverage values for a range of shift sizes

Description

Retrieve the relative cross-coverage values for a range of shift sizes

Methods

signature(object = "ChIPQCexperiment")

Retrieve a vector of relative cross-coverage values for all samples in a ChIP-seq experiment, computed based on the maximal value (when extending the reads to the optimal fragment length) versus the cross-coverage values using non-extended reads.

signature(object = "list")

Retrieve a vector of relative cross-coverage values for all samples in a list of ChIPQCsample objects, computed based on the maximal value (when extending the reads to the optimal fragment length) versus the cross-coverage values using non-extended reads.

signature(object = "ChIPQCsample")

Retrieve the relative cross-coverage value for a sample, computed based on the maximal value (when extending the reads to the optimal fragment length) versus the cross-coverage values using non-extended reads.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
RelativeCrossCoverage(exampleExp)
RelativeCrossCoverage(QCsample(exampleExp,1))

genialis/ChIPQC documentation built on May 24, 2022, 5:24 p.m.