ReadLengthCrossCoverage-methods: Retrieve the cross coverage values without extending reads

In genialis/ChIPQC: Quality metrics for ChIPseq data

Retrieve the cross coverage values without extending reads

Description

Retrieve the cross coverage values without extending reads.

Methods

signature(object = "ChIPQCexperiment")

Retrieve a vector of cross-coverage values for all samples in a ChIP-seq experiment, with no shift.

signature(object = "list")

Retrieve a vector of cross-coverage values for all samples in a list of ChIPQCsample objects, with no shift.

signature(object = "ChIPQCsample")

Retrieve the cross-coverage value for a sample, with no shift.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
ReadLengthCrossCoverage(exampleExp)
ReadLengthCrossCoverage(QCsample(exampleExp,1))

genialis/ChIPQC documentation built on May 24, 2022, 5:24 p.m.