Man pages for genomewalker/oligo4fun
Oligtyping diagnostics for functional genes
| aln | _Rhodopirellula_ sp. alignemnts used for Zure et al., 2016 |
| entropy | Entropy values for each position of the alignment used for... |
| get_3rd_codon | Create a sequence alignment with only the 3rd codon |
| oligo4fun | Minimum Entropy Decomposition diagnostics for functional... |
| plot_entropy_density | Plot the distribution of entropy values |
| plot_saturation | Draw a saturation plot of the oligotyping input file |
| plot_saturation_n | Draw a saturation plot of the oligotyping input file (n)... |
| process_entropy_file | Pre-process entropy-analysis file |
| random_sequences | Pick random sequences from the alignment |
| remove_3rd_codon | Create a sequence alignment with only the 1st and 2nd codon |
| write_saturation_alignments | Write alignments from each saturation test random sampling to... |
| write_saturation_plot_density | Write a density plot of the transitions and transversions... |
| write_saturation_plots | Write saturation plots from each saturation test random... |
