entropy: Entropy values for each position of the alignment used for...
In genomewalker/oligo4fun: Oligtyping diagnostics for functional genes
Description
Usage
Format
References
Description
A dataset containing the entropy values for each 483 nucleotides contained in the
alignemnt. This is a raw dataframe containing the results of running entropy-analysis
command from oligotyping package.
Usage
1
Format
A data frame with 483 rows and 2 variables:
V1: nucleotide positions of the alignment
V2: entropy value
References
Eren, A. M., Morrison, H. G., Lescault, P. J., Reveillaud, J., Vineis, J. H., & Sogin, M. L. (2015).
Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene
sequences. The ISME Journal, 9(4), 968-979
Zure, M., Fernandez-Guerra, A., Munn C. and Harder, J. (2016). High resolution distribution of
closely related Rhodopirellula species in European coastal sediments. Submitted.
genomewalker/oligo4fun documentation built on May 17, 2019, 1:11 a.m.
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Description Usage Format References
Description
A dataset containing the entropy values for each 483 nucleotides contained in the alignemnt. This is a raw dataframe containing the results of running entropy-analysis command from oligotyping package.
Usage
1 |
Format
A data frame with 483 rows and 2 variables:
V1: nucleotide positions of the alignment
V2: entropy value
References
Eren, A. M., Morrison, H. G., Lescault, P. J., Reveillaud, J., Vineis, J. H., & Sogin, M. L. (2015). Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences. The ISME Journal, 9(4), 968-979
Zure, M., Fernandez-Guerra, A., Munn C. and Harder, J. (2016). High resolution distribution of closely related Rhodopirellula species in European coastal sediments. Submitted.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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