Man pages for genomewalker/oligo4fun
Oligtyping diagnostics for functional genes

aln_Rhodopirellula_ sp. alignemnts used for Zure et al., 2016
entropyEntropy values for each position of the alignment used for...
get_3rd_codonCreate a sequence alignment with only the 3rd codon
oligo4funMinimum Entropy Decomposition diagnostics for functional...
plot_entropy_densityPlot the distribution of entropy values
plot_saturationDraw a saturation plot of the oligotyping input file
plot_saturation_nDraw a saturation plot of the oligotyping input file (n)...
process_entropy_filePre-process entropy-analysis file
random_sequencesPick random sequences from the alignment
remove_3rd_codonCreate a sequence alignment with only the 1st and 2nd codon
write_saturation_alignmentsWrite alignments from each saturation test random sampling to...
write_saturation_plot_densityWrite a density plot of the transitions and transversions...
write_saturation_plotsWrite saturation plots from each saturation test random...
genomewalker/oligo4fun documentation built on May 14, 2017, 8:48 a.m.