process_entropy_file: Pre-process entropy-analysis file

In genomewalker/oligo4fun: Oligtyping diagnostics for functional genes

Description

Pre-process the entropy-analysis file containing the results after running entropy-analysis command from oligotyping package

Usage

process_entropy_file(file = file)

Arguments

file	a dataframe containing the results after running entropy-analysis command from oligotyping package

Details

Transforms the generated entropy file for plotting.

Value

A dataframe with the nucleotide positions, the entropy values and the codon position

References

Eren, A. M., Morrison, H. G., Lescault, P. J., Reveillaud, J., Vineis, J. H., & Sogin, M. L. (2015). Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences. The ISME Journal, 9(4), 968-979

Examples

entropy_file <- process_entropy_file(entropy)

genomewalker/oligo4fun documentation built on May 17, 2019, 1:11 a.m.