GEO_GetSampleInfo: The GEO_GetSampleInfo function
In gevaertlab/EpiMix: EpiMix: an integrative tool for the population-level analysis of DNA methylation
View source: R/GEO_Download_Preprocess.R
GEO_GetSampleInfo R Documentation
The GEO_GetSampleInfo function
Description
auxiliary function to generate a sample information dataframe that indicates which study group each sample belongs to.
Usage
GEO_GetSampleInfo(METdirectories, group.column, targetDirectory = ".")
Arguments
METdirectories
list of the file paths to the downloaded DNA methylation data, which can be the output from the GEO_Download_DNAMethylation function.
group.column
character string indicating the column in the phenotypic data that defines the study group of each sample. The values in this column will be used to split the experiment and the control group.
targetDirectory
file path to save the output. Default: '.' (current directory)
Value
a dataframe with two columns: a 'primary' column indicating the actual sample names, a 'sample.type' column indicating the study group for each sample.
gevaertlab/EpiMix documentation built on July 20, 2023, 9:28 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/GEO_Download_Preprocess.R
| GEO_GetSampleInfo | R Documentation |
The GEO_GetSampleInfo function
Description
auxiliary function to generate a sample information dataframe that indicates which study group each sample belongs to.
Usage
GEO_GetSampleInfo(METdirectories, group.column, targetDirectory = ".")
Arguments
METdirectories |
list of the file paths to the downloaded DNA methylation data, which can be the output from the GEO_Download_DNAMethylation function. |
group.column |
character string indicating the column in the phenotypic data that defines the study group of each sample. The values in this column will be used to split the experiment and the control group. |
targetDirectory |
file path to save the output. Default: '.' (current directory) |
Value
a dataframe with two columns: a 'primary' column indicating the actual sample names, a 'sample.type' column indicating the study group for each sample.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.