filterProbes: The filterProbes function

In gevaertlab/EpiMix: EpiMix: an integrative tool for the population-level analysis of DNA methylation

The filterProbes function

Description

filter CpG sites based on user-specified conditions

Usage

filterProbes(
  mode,
  gene.expression.data,
  listOfGenes,
  promoters,
  met.platform,
  genome
)

Arguments

mode	analytic mode
gene.expression.data	matrix of gene expression data
listOfGenes	list of genes of interest
promoters	logic indicating whether to filter CpGs on promoters
met.platform	methylation platform
genome	genome build version

Value

filtered ProbeAnnotation

gevaertlab/EpiMix documentation built on July 20, 2023, 9:28 a.m.