calcDistNearestTSS: Calculate distance from region to nearest TSS
In gevaertlab/EpiMix: EpiMix: an integrative tool for the population-level analysis of DNA methylation
View source: R/GetNearbyGenes.R
calcDistNearestTSS R Documentation
Calculate distance from region to nearest TSS
Description
Idea
For a given region R linked to X genes G
merge R with nearest TSS for G (multiple)
this will increse nb of lines
i.e R1 - G1 - TSS1 - DIST1
R1 - G1 - TSS2 - DIST2
To vectorize the code:
make a granges from left and onde from right
and find distance
collapse the results keeping min distance for equals values
Usage
calcDistNearestTSS(links, TRange, tssAnnot)
Arguments
links
Links to calculate the distance
TRange
Genomic coordinates for Tartget region
tssAnnot
TSS annotation
Value
dataframe of genomic distance from TSS
Author(s)
Tiago C. Silva
gevaertlab/EpiMix documentation built on July 20, 2023, 9:28 a.m.
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View source: R/GetNearbyGenes.R
| calcDistNearestTSS | R Documentation |
Calculate distance from region to nearest TSS
Description
Idea For a given region R linked to X genes G merge R with nearest TSS for G (multiple) this will increse nb of lines i.e R1 - G1 - TSS1 - DIST1 R1 - G1 - TSS2 - DIST2 To vectorize the code: make a granges from left and onde from right and find distance collapse the results keeping min distance for equals values
Usage
calcDistNearestTSS(links, TRange, tssAnnot)
Arguments
links |
Links to calculate the distance |
TRange |
Genomic coordinates for Tartget region |
tssAnnot |
TSS annotation |
Value
dataframe of genomic distance from TSS
Author(s)
Tiago C. Silva
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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