addDistNearestTSS: Calculate the distance between probe and gene TSS

In gevaertlab/EpiMix: EpiMix: an integrative tool for the population-level analysis of DNA methylation

Calculate the distance between probe and gene TSS

Description

Calculate the distance between probe and gene TSS

Usage

addDistNearestTSS(data, NearGenes, genome, met.platform, cores = 1)

Arguments

data	A multi Assay Experiment with both DNA methylation and gene Expression objects
NearGenes	A list or a data frame with the pairs gene probes
genome	Which genome build will be used: hg38 (default) or hg19.
met.platform	DNA methyaltion platform to retrieve data from: EPIC or 450K (default)
cores	Number fo cores to be used. Deafult: 1

Value

a dataframe of nearest genes with distance to TSS.

gevaertlab/EpiMix documentation built on July 20, 2023, 9:28 a.m.