filterMethMatrix: The filterMethMatrix function

In gevaertlab/EpiMix: EpiMix: an integrative tool for the population-level analysis of DNA methylation

The filterMethMatrix function

Description

The filterMethMatrix function

Usage

filterMethMatrix(MET_matrix, control.names, gene.expression.data)

Arguments

MET_matrix	a matrix of methylation states from the EpiMix results
control.names	a character vector of control sample names
gene.expression.data	a matrix with gene expression data

Details

This function filters methylation states from the beta mixture modeling for each probe. The filtered probes can be used to model gene expression by Wilcoxon test.

Value

a matrix of methylation states for each differentially methylated probe with probes in rows and patient in columns.

gevaertlab/EpiMix documentation built on July 20, 2023, 9:28 a.m.